None of the patients received therapy before surgery. The tissues from all of the patients were staged according to the American Joint Committee on Cancer (AJCC) breast cancer TNM staging system: stage I, n = 29; stage II, n = 25; and stage III, n = 6. All tissue samples were fixed in 10% formalin and then embedded in paraffin for histologic examination. Immunohistochemistry

Immunohistochemical staining was performed on paraffin-embedded specimens. Slides were routinely deparaffinized and hydrated. Endogenous peroxidase was blocked with 3% hydrogen peroxide for 10 min, and the deparaffinized sections in 10 mM citrate buffer were microwaved for 30 minutes for epitope retrieval. Then, the sections were incubated with an antibody against RABEX-5 (1:50 dilution, Santa Cruz Biotechnology, USA) and an antibody against Rabusertib MMP-9 (1:100 dilution, Ab76003, Abcam, UK) for 18 h at 4°C in 2% bovine https://www.selleckchem.com/products/bay-11-7082-bay-11-7821.html serum albumin in Phosphate-buffered saline (PBS). A secondary antibody was added and incubated for 1 h at 37°C. The sections were counterstained with hematoxylin for 3–5 min. PBS, instead of primary antibody, was used as a negative control. For the evaluation of expression, IPP (version 6.0, Media Cybernetics, Silver Spring, MD) was used as described previously [15]. Briefly, 5 digital images at 1360×1024 pixel resolution and 400 × magnification were captured by the LEICA DM500 ICC50 microscope (Leica Microsystems, Germany). The measurement

parameters included area, sum, and IOD, and the values were counted. Cell lines and culture conditions Five breast cancer cell lines (MCF-7, MDA-MB-231, BT549, T47D and SKBR3) were used. All cell lines were obtained from the Molecular Oncology and Epigenetics Laboratory of The First Affiliated Hospital of Chongqing Medical University. Cell lines were routinely maintained in RPMI 1640 medium supplemented with 10% fetal bovine serum (GIBCO, Grand Island, NY) in PTK6 a 5% CO2 atmosphere at 37°C. RNA extraction, reverse transcription, and real-time PCR analysis Total RNA was isolated from tissues and cells using Trizol (Invitrogen, USA) according to the manufacturer’s instructions. Reverse transcription was performed using random

hexamers, and reverse transcription-PCR using Go-Taq (Promega, Madison, WI, USA), with GAPDH as a control, was performed using the following primers: RABEX-5 F: 5′-TTGGACAGATGGAATTGCAA-3′ and RABEX-5R: 5′-GTTGCAGTGGTGGAGGAAGT-3′. The PCR program consisted of initial denaturation at 95°C for 2 min, followed by 32 cycles (for RABEX-5) or 23 cycles (for GAPDH) of the reaction (94°C for 30 s, 55°C for 30 s and 72°C for 30 s), with a final extension at 72°C for 10 min. Quantitative real-time PCR was performed using the SYBR Premix Ex Taq™ kit (TAKARA, Japan). After an initial denaturation step at 95°C for 30 s, thermal cycling was initiated. Each cycle consisted of 95°C for 5 s and 60°C for 34 s. The fluorescent signal was acquired at the end of the elongation step. A total of 40 cycles was performed.